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    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840135, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT1G32415
    Locus tag
    AT1G32415
    See related
    Araport:AT1G32415
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (11695596..11697964)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tobamovirus multiplication 2A Neighboring gene Vacuolar protein sorting 55 (VPS55) family protein Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and initial characterization of temperature-sensitive mutants of Arabidopsis thaliana that are impaired in root redifferentiation. Sugiyama M. Plant Cell Physiol, 2003 Jun. PMID 12826624
    2. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Hu Z, et al. Plant Cell, 2016 Sep. PMID 27543091, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102976.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondria-nucleus signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_564401.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G53600.1); Has 53053 Blast hits to 14536 proteins in 238 species: Archae - 0; Bacteria - 16; Metazoa - 90; Fungi - 108; Plants - 52105; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11695596..11697964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102976.2 → NP_564401.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564401.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0C7R0, Q9LQL7
      UniProtKB/TrEMBL
      A0A178W861, A0A5S9WIE9
      Conserved Domains (3) summary
      PLN03077
      Location:112 → 730
      PLN03077; Protein ECB2; Provisional
      PLN03081
      Location:49 → 166
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:171 → 198
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C7R0.1

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