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    Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822302, updated on 18-Sep-2024

    Summary

    Official Full Name
    Plant self-incompatibility protein S1 family
    Primary source
    TAIR:AT3G26860
    Locus tag
    AT3G26860
    See related
    Araport:AT3G26860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (9901294..9902119, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Esterase/lipase/thioesterase family protein Neighboring gene histone-lysine N-methyltransferase Neighboring gene RNA-directed DNA polymerase (reverse transcriptase)-related family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene miscRNA

    General gene information

    NM_001338836.1
    NM_113598.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Plant self-incompatibility protein S1 family
    NP_001319651.1
    • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G27331.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_189321.2
    • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G27331.1); Has 39 Blast hits to 39 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9901294..9902119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338836.1NP_001319651.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LW24
      UniProtKB/TrEMBL
      A0A5S9XFZ7
      Conserved Domains (1) summary
      pfam05938
      Location:23113
      Self-incomp_S1; Plant self-incompatibility protein S1
    2. NM_113598.2NP_189321.2  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189321.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PEL2
      Conserved Domains (1) summary
      pfam05938
      Location:2386
      Self-incomp_S1; Plant self-incompatibility protein S1