U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ARF9 auxin response factor 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828498, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ARF9
    Official Full Name
    auxin response factor 9
    Primary source
    TAIR:AT4G23980
    Locus tag
    AT4G23980
    See related
    Araport:AT4G23980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 9; T32A16.150; T32A16_150
    Summary
    Encodes auxin response factor 9 (ARF9).
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ARF9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (12451143..12455369)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Galactose-binding protein Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene cellulose synthase like G3 Neighboring gene cellulose synthase like G2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Activation and repression of transcription by auxin-response factors. Ulmasov T, et al. Proc Natl Acad Sci U S A, 1999 May 11. PMID 10318972, Free PMC Article
    2. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. Li JF, et al. PLoS One, 2011. PMID 22096563, Free PMC Article
    3. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Varaud E, et al. Plant Cell, 2011 Mar. PMID 21421811, Free PMC Article
    4. Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. Piya S, et al. Front Plant Sci, 2014. PMID 25566309, Free PMC Article
    5. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux T, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734647, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001036629.2
    NM_118530.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    auxin response factor 9
    NP_001031706.1
    • auxin response factor 9 (ARF9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_194129.1
    • auxin response factor 9 (ARF9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 2797 Blast hits to 2432 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 2; Plants - 2739; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12451143..12455369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118530.5 → NP_194129.1  auxin response factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194129.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22991, Q0WRN8, Q2V3F5, Q56X14, Q9XED8
      UniProtKB/TrEMBL
      A0A178V403, A0A5S9XVX8, A0A654FS80
      Conserved Domains (3) summary
      pfam02309
      Location:506 → 601
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:116 → 218
      B3; B3 DNA binding domain
      pfam06507
      Location:242 → 321
      Auxin_resp; Auxin response factor

    2. NM_001036629.2 → NP_001031706.1  auxin response factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031706.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FS80
      Conserved Domains (3) summary
      pfam02309
      Location:504 → 599
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:116 → 218
      B3; B3 DNA binding domain
      pfam06507
      Location:242 → 321
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XED8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools