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    myb family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834104, updated on 18-Sep-2024

    Summary

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    Official Full Name
    myb family transcription factor
    Primary source
    TAIR:AT5G41020
    Locus tag
    AT5G41020
    See related
    Araport:AT5G41020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MEE6.9; MEE6_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (16425883..16427797, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene YELLOW STRIPE like 4 Neighboring gene ncRNA Neighboring gene DNA directed RNA polymerase, 7 kDa subunit Neighboring gene uncharacterized protein Neighboring gene TCP family transcription factor Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123467.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb family transcription factor
    NP_198918.1
    • myb family transcription factor; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16425883..16427797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123467.2 → NP_198918.1  myb family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y9S8, A0A654G6Z5, Q9FLM7
      Conserved Domains (1) summary
      pfam13921
      Location:381 → 439
      Myb_DNA-bind_6; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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