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    Triqk triple QxxK/R motif containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500413, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Triqkprovided by RGD
    Official Full Name
    triple QxxK/R motif containingprovided by RGD
    Primary source
    RGD:1561260
    See related
    EnsemblRapid:ENSRNOG00000039924 AllianceGenome:RGD:1561260
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Orthologous to human TRIQK (triple QxxK/R motif containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 62.0), Lung (RPKM 40.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Triqk in Genome Data Viewer
    Location:
    5q13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (31188816..31261705)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (26391511..26464422)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (26493185..26567491)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 12B-A-like Neighboring gene RNA binding motif protein 12B Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene uncharacterized LOC120102833 Neighboring gene transfer RNA threonine (anticodon AGU) 10 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    triple QxxK/R motif-containing protein
    Names
    protein TRIQK
    triple repetitive-sequence of QXXK/R protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171802.1 → NP_001165273.1  triple QxxK/R motif-containing protein

      See identical proteins and their annotated locations for NP_001165273.1

      Status: VALIDATED

      Source sequence(s)
      BC089993, CA507504, CB805415
      UniProtKB/Swiss-Prot
      Q5EB66
      UniProtKB/TrEMBL
      A6II86
      Related
      ENSRNOP00000058042.2, ENSRNOT00000061328.5
      Conserved Domains (1) summary
      pfam15168
      Location:1 → 52
      TRIQK; Triple QxxK/R motif-containing protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      31188816..31261705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006237906.5 → XP_006237968.1  triple QxxK/R motif-containing protein isoform X1

      See identical proteins and their annotated locations for XP_006237968.1

      UniProtKB/Swiss-Prot
      Q5EB66
      UniProtKB/TrEMBL
      A6II86
      Conserved Domains (1) summary
      pfam15168
      Location:1 → 52
      TRIQK; Triple QxxK/R motif-containing protein family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EB66.1 GenPept UniProtKB/Swiss-Prot:Q5EB66

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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