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    TraB family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835278, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TraB family protein
    Primary source
    TAIR:AT5G52030
    Locus tag
    AT5G52030
    See related
    Araport:AT5G52030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSG15.11; MSG15_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21128085..21130244)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene MATE efflux family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344973.1
    NM_203197.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TraB family protein
    NP_001318785.1
    • TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974926.1
    • TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT1G05270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21128085..21130244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344973.1 → NP_001318785.1  TraB family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KER9
      Conserved Domains (1) summary
      cl12050
      Location:50 → 243
      TraB; TraB family

    2. NM_203197.1 → NP_974926.1  TraB family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974926.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGS4, Q9FJ89
      Conserved Domains (1) summary
      cl12050
      Location:89 → 387
      TraB; TraB family
    Nucleotide Protein
    Heading Accession and Version

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