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    PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830642, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PEI1
    Official Full Name
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Primary source
    TAIR:AT5G07500
    Locus tag
    AT5G07500
    See related
    Araport:AT5G07500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTZF6; T2I1.210; T2I1_210; Tandem CCCH Zinc Finger protein 6; TZF6
    Summary
    Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.
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    Genomic context

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    See PEI1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (2372619..2373655)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene glycine-rich protein 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Li Z, et al. Plant Cell, 1998 Mar. PMID 9501112, Free PMC Article
    2. The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination. Bogamuwa S, et al. Plant Cell Environ, 2013 Aug. PMID 23421766
    3. Plant Tandem CCCH Zinc Finger Proteins Interact with ABA, Drought, and Stress Response Regulators in Processing-Bodies and Stress Granules. Bogamuwa S, et al. PLoS One, 2016. PMID 26978070, Free PMC Article
    4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtTZF4, 5 and 6 affect seed germination by controlling genes critical for abscisic acid (ABA) and gibberellic acid (GA) response.
      Title: The Arabidopsis tandem CCCH zinc finger proteins AtTZF4, 5 and 6 are involved in light-, abscisic acid- and gibberellic acid-mediated regulation of seed germination.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120832.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    NP_196367.1
    • PEI1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G58620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2372619..2373655
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120832.2 → NP_196367.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196367.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFE4, O65036
      UniProtKB/TrEMBL
      A0A5S9Y2T5, A0A654FZ66
      Conserved Domains (1) summary
      smart00356
      Location:95 → 117
      ZnF_C3H1; zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65036.1

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