Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rrp9provided by RGD
Official Full Name: ribosomal RNA processing 9, U3 small nucleolar RNA binding proteinprovided by RGD
Primary source: RGD:1307881
See related: EnsemblRapid:ENSRNOG00000012927 AllianceGenome:RGD:1307881
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Rnu3ip2
Summary: Predicted to enable snoRNA binding activity. Predicted to contribute to U3 snoRNA binding activity. Predicted to be involved in rRNA processing and ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D methylation guide snoRNP complex and small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Thymus (RPKM 77.0), Spleen (RPKM 65.6) and 9 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 8q32

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	8	NC_086026.1 (115995119..116004832)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	8	NC_051343.1 (107116411..107126123)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	8	NC_005107.4 (115179899..115188551)

Chromosome 8 - NC_086026.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
contributes_to U3 snoRNA binding	ISO Inferred from Sequence Orthology more info
enables U3 snoRNA binding	ISO Inferred from Sequence Orthology more info
enables snoRNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in rRNA processing	ISO Inferred from Sequence Orthology more info
involved_in ribosomal small subunit biogenesis	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
part_of box C/D methylation guide snoRNP complex	ISO Inferred from Sequence Orthology more info
located_in nucleolus	ISO Inferred from Sequence Orthology more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info
part_of small-subunit processome	ISO Inferred from Sequence Orthology more info

General protein information

Go to the top of the page Help

Preferred Names: U3 small nucleolar RNA-interacting protein 2

Names: RNA, U3 small nucleolar interacting protein 2; RRP9, small subunit (SSU) processome component, homolog; ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108778.1 → NP_001102248.1 U3 small nucleolar RNA-interacting protein 2

See identical proteins and their annotated locations for NP_001102248.1

Status: PROVISIONAL

Source sequence(s)

CH473954

UniProtKB/TrEMBL

A0A8I6GFG9, B0BND5, F7EPW8

Related

ENSRNOP00000017469.5, ENSRNOT00000017469.8

Conserved Domains (2) summary

cd00200
Location:142 → 442

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:152 → 200

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086026.1 Reference GRCr8

Range

115995119..116004832

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039081786.2 → XP_038937714.1 U3 small nucleolar RNA-interacting protein 2 isoform X1

UniProtKB/TrEMBL

A0A8I6GFG9, B0BND5, F7EPW8

Conserved Domains (2) summary

cd00200
Location:142 → 442

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:152 → 200

7WD40; WD40 repeat [structural motif]
XM_063265820.1 → XP_063121890.1 U3 small nucleolar RNA-interacting protein 2 isoform X2