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    QRT1 Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835653, updated on 18-Sep-2024

    Summary

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    Official Symbol
    QRT1
    Official Full Name
    Pectin lyase-like superfamily protein
    Primary source
    TAIR:AT5G55590
    Locus tag
    AT5G55590
    See related
    Araport:AT5G55590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDF20.3; MDF20_3; QUARTET 1
    Summary
    Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
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    Genomic context

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    See QRT1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (22519654..22521858)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene uncharacterized protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene Agenet and bromo-adjacent homology (BAH) domain-containing protein Neighboring gene isopentenyl-diphosphate delta-isomerase Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene. Francis KE, et al. Plant Physiol, 2006 Nov. PMID 16980565, Free PMC Article
    2. Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall. Rhee SY, et al. Plant J, 1998 Jul. PMID 9744097
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The role of QUARTET1 (QRT1), a pectin methylesterase gene, in the separation of pollen tetrads in A. thaliana is reported.
      Title: Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001345146.1
    NM_124941.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pectinesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pectin catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectin lyase-like superfamily protein
    NP_200370.1
    • QUARTET 1 (QRT1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pectin catabolic process; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 5 post anthesis, sepals enclosing floral bud, petal differentiation and expansion stage, fruit development stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G47500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22519654..22521858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124941.3 → NP_200370.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200370.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FM79
      UniProtKB/TrEMBL
      A0A5S9YEG3, A0A654GB98
      Conserved Domains (1) summary
      PLN02671
      Location:1 → 380
      PLN02671; pectinesterase

    2. NM_001345146.1 → NP_001331632.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEF8, A0A5S9YEG3
      Conserved Domains (1) summary
      cl29893
      Location:1 → 332
      Pectinesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FM79.1

    Gene LinkOut

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