U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    TAR2 tryptophan aminotransferase related 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828569, updated on 18-Sep-2024

    Summary

    Official Symbol
    TAR2
    Official Full Name
    tryptophan aminotransferase related 2
    Primary source
    TAIR:AT4G24670
    Locus tag
    AT4G24670
    See related
    Araport:AT4G24670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22K18.130; F22K18_130; tryptophan aminotransferase related 2
    Summary
    Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TAR2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (12727531..12731331, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene homeobox protein 22 Neighboring gene modifier of snc1 Neighboring gene ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein Neighboring gene uncharacterized protein

    Pathways from PubChem

    General gene information

    NM_118600.2
    NM_202879.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to nitrogen levels PubMed 
    acts_upstream_of_or_within cotyledon development PubMed 
    acts_upstream_of_or_within cotyledon vascular tissue pattern formation PubMed 
    acts_upstream_of_or_within defense response to bacterium PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy PubMed 
    acts_upstream_of_or_within flower development PubMed 
    acts_upstream_of_or_within gynoecium development PubMed 
    acts_upstream_of_or_within indoleacetic acid biosynthetic process PubMed 
    acts_upstream_of_or_within lateral root development PubMed 
    acts_upstream_of_or_within maintenance of root meristem identity PubMed 
    acts_upstream_of_or_within phloem or xylem histogenesis PubMed 
    acts_upstream_of_or_within positive gravitropism PubMed 
    acts_upstream_of_or_within primary root development PubMed 
    acts_upstream_of_or_within response to ethylene PubMed 
    acts_upstream_of_or_within response to ethylene PubMed 
    acts_upstream_of_or_within shoot system development PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane PubMed 

    General protein information

    Preferred Names
    tryptophan aminotransferase related 2
    NP_567706.1
    • tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974608.1
    • tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12727531..12731331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202879.2 → NP_974608.1  tryptophan aminotransferase related 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974608.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94A02, Q9SB62
      UniProtKB/TrEMBL
      A0A178V3U5, A0A5S9XVH2
      Conserved Domains (1) summary
      pfam04864
      Location:79 → 436
      Alliinase_C; Allinase
    2. NM_118600.2 → NP_567706.1  tryptophan aminotransferase related 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567706.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94A02, Q9SB62
      UniProtKB/TrEMBL
      A0A178V3U5, A0A5S9XVH2
      Conserved Domains (1) summary
      pfam04864
      Location:79 → 436
      Alliinase_C; Allinase
    External link. Please review our privacy policy.