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    CLK4-associating serine/arginine-rich protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829852, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CLK4-associating serine/arginine-rich protein
    Primary source
    TAIR:AT4G36980
    Locus tag
    AT4G36980
    See related
    Araport:AT4G36980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AP22.35; AP22_35
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (17433601..17437217, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene Remorin family protein Neighboring gene heat shock factor 4 Neighboring gene accelerated cell death 2 (ACD2) Neighboring gene centrin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085036.5
    NM_001204010.1
    NM_119861.9

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLK4-associating serine/arginine-rich protein
    NP_001078505.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink).
    NP_001190939.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147).
    NP_001190940.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147).
    NP_195415.6
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17433601..17437217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001204011.1 → NP_001190940.1  CLK4-associating serine/arginine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190940.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWA4, F4JR75
      Conserved Domains (1) summary
      pfam09750
      Location:41 → 174
      DRY_EERY; Alternative splicing regulator

    2. NM_001204010.1 → NP_001190939.1  CLK4-associating serine/arginine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190939.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWA4, F4JR77
      Conserved Domains (1) summary
      pfam09750
      Location:41 → 174
      DRY_EERY; Alternative splicing regulator

    3. NM_001085036.5 → NP_001078505.1  CLK4-associating serine/arginine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078505.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWA4, F4JR78
      Conserved Domains (1) summary
      pfam09750
      Location:41 → 174
      DRY_EERY; Alternative splicing regulator

    4. NM_119861.9 → NP_195415.6  CLK4-associating serine/arginine-rich protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195415.6

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWA4, A8MS51
      Conserved Domains (1) summary
      pfam09750
      Location:41 → 174
      DRY_EERY; Alternative splicing regulator
    Nucleotide Protein
    Heading Accession and Version

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