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    DI21 drought-induced 21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827273, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DI21
    Official Full Name
    drought-induced 21
    Primary source
    TAIR:AT4G15910
    Locus tag
    AT4G15910
    See related
    Araport:AT4G15910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDI21; DL3995W; drought-induced 21; FCAALL.235
    Summary
    encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.
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    Genomic context

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    See DI21 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (9028262..9029477)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene binding protein Neighboring gene pleiotropic regulatory locus 1 Neighboring gene Nodulin MtN3 family protein Neighboring gene Dynein light chain type 1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. Oono Y, et al. Funct Integr Genomics, 2006 Jul. PMID 16463051
    2. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Maruyama K, et al. Plant J, 2004 Jun. PMID 15165189
    3. Abscisic acid-dependent and -independent regulation of gene expression by progressive drought in Arabidopsis thaliana. Gosti F, et al. Mol Gen Genet, 1995 Jan 6. PMID 7823904
    4. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    5. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117683.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cold acclimation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to abscisic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    drought-induced 21
    NP_193326.4
    • drought-induced 21 (DI21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 120 Blast hits to 120 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9028262..9029477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117683.5 → NP_193326.4  drought-induced 21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193326.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23440, Q0WRZ2, Q39084
      UniProtKB/TrEMBL
      A0A178UX68, A0A5S9XTH9, A0A654FQ40
      Conserved Domains (1) summary
      pfam03242
      Location:3 → 97
      LEA_3; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39084.1

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