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    methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822476, updated on 18-Sep-2024

    Summary

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    Official Full Name
    methyltransferase
    Primary source
    TAIR:AT3G28460
    Locus tag
    AT3G28460
    See related
    Araport:AT3G28460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (10672041..10674456, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene CLAVATA3/ESR-RELATED 25 Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene Oxoglutarate/iron-dependent oxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RsmD, a Chloroplast rRNA m2G Methyltransferase, Plays a Role in Cold Stress Tolerance by Possibly Affecting Chloroplast Translation in Arabidopsis. Ngoc LNT, et al. Plant Cell Physiol, 2021 Oct 11. PMID 34015128
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RsmD, a Chloroplast rRNA m2G Methyltransferase, Plays a Role in Cold Stress Tolerance by Possibly Affecting Chloroplast Translation in Arabidopsis.
      Title: RsmD, a Chloroplast rRNA m2G Methyltransferase, Plays a Role in Cold Stress Tolerance by Possibly Affecting Chloroplast Translation in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    NM_001338958.1
    NM_113766.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA (guanine-N2-)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyltransferase
    NP_189487.2
    • methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4869 Blast hits to 4869 proteins in 1755 species: Archae - 2; Bacteria - 3296; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10672041..10674456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338957.1 → NP_001326387.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP45, A0A5S9XGS0, A0A654FCW3
      Conserved Domains (1) summary
      cl17173
      Location:114 → 271
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. NM_113766.5 → NP_189487.2  methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189487.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIF1, A0A384LNF8, A0A5S9XGS0, A0A654FCW3, Q9LSI8
      Conserved Domains (1) summary
      pfam03602
      Location:114 → 303
      Cons_hypoth95; Conserved hypothetical protein 95

    3. NM_001338958.1 → NP_001326388.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP46, A0A5S9XGS0, A0A654FCW3
    Nucleotide Protein
    Heading Accession and Version

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