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    Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
    Primary source
    TAIR:AT3G11960
    Locus tag
    AT3G11960
    See related
    Araport:AT3G11960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (3786314..3793728)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene homogentisate prenyltransferase Neighboring gene TRAF-like superfamily protein Neighboring gene RIBOSOMAL RNA PROCESSING 5 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112029.4
    NM_180234.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
    NP_187802.2
    • Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1073 Blast hits to 789 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 287; Plants - 277; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
    NP_850565.1
    • Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 954 Blast hits to 777 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 233; Plants - 246; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3786314..3793728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337966.1 → NP_001327782.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBB9, A0A654F7D2, Q84R20
      Conserved Domains (2) summary
      pfam03178
      Location:1069 → 1330
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:116 → 674
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    2. NM_001337967.1 → NP_001327783.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTD6, A0A654F7D2

    3. NM_112029.4 → NP_187802.2  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187802.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XBB9, A0A654F7D2, Q84R20
      Conserved Domains (2) summary
      pfam03178
      Location:1069 → 1330
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:116 → 674
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    4. NM_180234.2 → NP_850565.1  Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850565.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J8K5, Q9SF03
      Conserved Domains (2) summary
      pfam03178
      Location:884 → 1280
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:116 → 616
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
    Nucleotide Protein
    Heading Accession and Version

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