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    RPB5E RNA polymerase II fifth largest subunit, E [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824614, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPB5E
    Official Full Name
    RNA polymerase II fifth largest subunit, E
    Primary source
    TAIR:AT3G54490
    Locus tag
    AT3G54490
    See related
    Araport:AT3G54490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''RNA polymerase II fifth largest subunit; E; E''; RNA polymerase II fifth largest subunit
    Summary
    NRPE5-like protein of unknown function; homologous to budding yeast RPB5
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    Genomic context

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    See RPB5E in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20173605..20175462)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) Neighboring gene SKP1/ASK-interacting protein 5 Neighboring gene ncRNA Neighboring gene agglutinin-like protein Neighboring gene ncRNA Neighboring gene Early-responsive to dehydration stress protein (ERD4) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Lahmy S, et al. Proc Natl Acad Sci U S A, 2009 Jan 20. PMID 19141635, Free PMC Article
    2. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Zhong X, et al. Proc Natl Acad Sci U S A, 2015 Jan 20. PMID 25561521, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115306.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase V complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II fifth largest subunit, E
    NP_191013.1
    • ''RNA polymerase II fifth largest subunit, E'' (RPB5E); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G57080.1); Has 766 Blast hits to 766 proteins in 283 species: Archae - 110; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 119; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20173605..20175462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115306.5 → NP_191013.1  RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191013.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1H8
      UniProtKB/TrEMBL
      A0A178VG61, A0A5S9XMG6, A0A654FFV5
      Conserved Domains (1) summary
      PLN03111
      Location:29 → 233
      PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1H8.1

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