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    SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824611, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
    Primary source
    TAIR:AT3G54460
    Locus tag
    AT3G54460
    See related
    Araport:AT3G54460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (20161942..20167326, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene homolog of carrot EP3-3 chitinase Neighboring gene glycoside hydrolase family 2 protein Neighboring gene SHI-related sequence 6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) Neighboring gene SKP1/ASK-interacting protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339666.1
    NM_148874.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
    NP_680129.1
    • SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20161942..20167326 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148874.5 → NP_680129.1  SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680129.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XJ3, Q9M1I1
      UniProtKB/TrEMBL
      A0A5S9XLH4, A0A654FIH3
      Conserved Domains (6) summary
      COG0553
      Location:756 → 1344
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18793
      Location:1194 → 1299
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18008
      Location:743 → 907
      DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
      pfam07496
      Location:577 → 620
      zf-CW; CW-type Zinc Finger
      pfam12937
      Location:285 → 320
      F-box-like
      cl28899
      Location:330 → 435
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. NM_001339666.1 → NP_001326105.1  SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN96
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1I1.1

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