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    ER lumen protein retaining receptor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822107, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER lumen protein retaining receptor family protein
    Primary source
    TAIR:AT3G25160
    Locus tag
    AT3G25160
    See related
    Araport:AT3G25160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9160168..9162220, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family B protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene ralf-like 25 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113420.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ER retention sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ER lumen protein retaining receptor family protein
    NP_189152.1
    • ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 182; Plants - 232; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9160168..9162220 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113420.3 → NP_189152.1  ER lumen protein retaining receptor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFM7, A0A654FBS5, Q5PNU5, Q84WD1
      Conserved Domains (1) summary
      pfam00810
      Location:74 → 217
      ER_lumen_recept; ER lumen protein retaining receptor
    Nucleotide Protein
    Heading Accession and Version

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