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    NOP56-like pre RNA processing ribonucleoprotein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832772, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NOP56-like pre RNA processing ribonucleoprotein
    Primary source
    TAIR:AT5G27140
    Locus tag
    AT5G27140
    See related
    Araport:AT5G27140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21B4.50; T21B4_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (9548542..9550597)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NOP56-like pre RNA processing ribonucleoprotein Neighboring gene AGAMOUS-like 39 Neighboring gene Na+/H+ exchanger 1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NOP56-like pre RNA processing ribonucleoprotein
    NP_198066.1
    • NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9548542..9550597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122596.1 → NP_198066.1  NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198066.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FAP1
      Conserved Domains (4) summary
      smart00931
      Location:130 → 181
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:136 → 364
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 48
      NOP5NT; NOP5NT (NUC127) domain
      pfam08208
      Location:383 → 423
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5

    2. NM_001343993.1 → NP_001330282.1  NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K2U4, O04656
      UniProtKB/TrEMBL
      A0A7G2FAP1
      Conserved Domains (4) summary
      smart00931
      Location:132 → 183
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:138 → 366
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 48
      NOP5NT; NOP5NT (NUC127) domain
      pfam08208
      Location:377 → 425
      RNA_polI_A34; DNA-directed RNA polymerase I subunit RPA34.5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04656.2

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