U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SPL8 squamosa promoter binding protein-like 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839275, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SPL8
    Official Full Name
    squamosa promoter binding protein-like 8
    Primary source
    TAIR:AT1G02065
    Locus tag
    AT1G02065
    See related
    Araport:AT1G02065
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    squamosa promoter binding protein-like 8
    Summary
    Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SPL8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (365165..367443)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene uncharacterized protein Neighboring gene zinc ion-binding protein Neighboring gene transcription regulator

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SPL8 and miR156-targeted SPL genes redundantly regulate Arabidopsis gynoecium differential patterning. Xing S, et al. Plant J, 2013 Aug. PMID 23621152
    2. SPL8, an SBP-box gene that affects pollen sac development in Arabidopsis. Unte US, et al. Plant Cell, 2003 Apr. PMID 12671094, Free PMC Article
    3. Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Wang JW, et al. Plant Cell, 2008 May. PMID 18492871, Free PMC Article
    4. miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis. Xing S, et al. Plant Cell, 2010 Dec. PMID 21177480, Free PMC Article
    5. Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Smaczniak C, et al. Proc Natl Acad Sci U S A, 2012 Jan 31. PMID 22238427, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_148426.5
    NM_202009.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within megasporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within microsporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    squamosa promoter binding protein-like 8
    NP_683267.1
    • squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 903 Blast hits to 889 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 44; Fungi - 4; Plants - 841; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_973738.1
    • squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      365165..367443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202009.3 → NP_973738.1  squamosa promoter binding protein-like 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973738.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3EDL2
      Conserved Domains (1) summary
      pfam03110
      Location:188 → 244
      SBP; SBP domain

    2. NM_148426.5 → NP_683267.1  squamosa promoter binding protein-like 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_683267.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXL3, Q9S849
      UniProtKB/TrEMBL
      A0A178WH70, A0A654E857
      Conserved Domains (1) summary
      pfam03110
      Location:188 → 261
      SBP; SBP domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GXL3.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools