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    SET domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839313, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SET domain-containing protein
    Primary source
    TAIR:AT1G01920
    Locus tag
    AT1G01920
    See related
    Araport:AT1G01920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22M8.5; F22M8_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (315983..319667)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene subtilase family protein Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene zinc finger protein-like protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene armadillo repeat kinesin 2 Neighboring gene SEC7-like guanine nucleotide exchange family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035856.3
    NM_001331315.1
    NM_001331316.1
    NM_100072.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SET domain-containing protein
    NP_001030933.1
    • SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_171694.3
    • SET domain-containing protein; BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 611 Blast hits to 608 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 239; Plants - 164; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      315983..319667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331314.1 → NP_001322378.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATV6
      Conserved Domains (1) summary
      cd10527
      Location:32 → 316
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins

    2. NM_001035856.3 → NP_001030933.1  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1A9, A0A7G2DP96, Q501D3
      Conserved Domains (1) summary
      cd10527
      Location:32 → 316
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins

    3. NM_001331315.1 → NP_001322376.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATS4, A0A5S9S440, A0A7G2DP96

    4. NM_001331316.1 → NP_001322377.1  SET domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATT8, A0A7G2DP96
      Conserved Domains (1) summary
      cd10527
      Location:32 → 316
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins

    5. NM_100072.4 → NP_171694.3  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171694.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DP96, F4HU79
    Nucleotide Protein
    Heading Accession and Version

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