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    plastid developmental protein DAG [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843585, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plastid developmental protein DAG
    Primary source
    TAIR:AT1G72530
    Locus tag
    AT1G72530
    See related
    Araport:AT1G72530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28P22.28; F28P22_28; RIP7; RNA edi7ting-Interacting Protein
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (27312954..27314644)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene PLAT/LH2 domain-containing lipoxygenase family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA synthetase beta subunit family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing. Bentolila S, et al. PLoS Genet, 2013 Jun. PMID 23818871, Free PMC Article
    2. Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana. Zehrmann A, et al. J Biol Chem, 2015 Mar 6. PMID 25583991, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001160996.1
    NM_105912.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastid developmental protein DAG
    NP_001154468.1
    • plastid developmental protein DAG, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 261 Blast hits to 241 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_177397.1
    • plastid developmental protein DAG, putative; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 238 Blast hits to 218 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27312954..27314644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105912.2 → NP_177397.1  plastid developmental protein DAG [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177397.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAH0
      UniProtKB/TrEMBL
      A0A178WAF0, A0A5S9WTE7

    2. NM_001160996.1 → NP_001154468.1  plastid developmental protein DAG [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154468.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IDD2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAH0.1

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