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    CDPK adapter, putative (DUF1423) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837042, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CDPK adapter, putative (DUF1423)
    Primary source
    TAIR:AT1G05410
    Locus tag
    AT1G05410
    See related
    Araport:AT1G05410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25N20.6; T25N20_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (1585371..1587794, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Neighboring gene photosystem II 11 kDa protein-like protein Neighboring gene tRNA-Asn Neighboring gene uncharacterized protein Neighboring gene ovate family protein 12 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035897.1
    NM_100420.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CDPK adapter, putative (DUF1423)
    NP_001030974.1
    • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563738.1
    • Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 192 Blast hits to 189 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 10; Plants - 173; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1585371..1587794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100420.4 → NP_563738.1  CDPK adapter, putative (DUF1423) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563738.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E769, Q8LAG1, Q8VZE5
      Conserved Domains (2) summary
      pfam07227
      Location:152 → 286
      PHD_Oberon; PHD - plant homeodomain finger protein
      cl00110
      Location:34 → 122
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...

    2. NM_001035897.1 → NP_001030974.1  CDPK adapter, putative (DUF1423) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030974.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGV7, Q8LAG1
      Conserved Domains (2) summary
      pfam07227
      Location:125 → 259
      PHD_Oberon; PHD - plant homeodomain finger protein
      cl00110
      Location:15 → 95
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...
    Nucleotide Protein
    Heading Accession and Version

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