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    ECT9 evolutionarily conserved C-terminal region 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839689, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT9
    Official Full Name
    evolutionarily conserved C-terminal region 9
    Primary source
    TAIR:AT1G27960
    Locus tag
    AT1G27960
    See related
    Araport:AT1G27960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 9; F13K9.7; F13K9_7
    Summary
    encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.
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    Genomic context

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    See ECT9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (9742137..9745796, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene P-glycoprotein 13 Neighboring gene glycosylphosphatidylinositol-anchored lipid protein transfer 1 Neighboring gene nuclear transport factor 2B Neighboring gene dihydrosphingosine phosphate lyase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332793.1
    NM_001332794.1
    NM_102561.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 9
    NP_174117.2
    • evolutionarily conserved C-terminal region 9 (ECT9); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 956 Blast hits to 946 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 120; Plants - 329; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9742137..9745796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102561.5 → NP_174117.2  evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174117.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDC5, A0A7G2DTN3, Q500V8
      Conserved Domains (1) summary
      pfam04146
      Location:330 → 467
      YTH; YT521-B-like domain

    2. NM_001332793.1 → NP_001322517.1  evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBN0, A0A1P8AUC1

    3. NM_001332794.1 → NP_001322518.1  evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WES0, A0A1P8AU98
    Nucleotide Protein
    Heading Accession and Version

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