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    Transcription factor IIS family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815849, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor IIS family protein
    Primary source
    TAIR:AT2G13640
    Locus tag
    AT2G13640
    See related
    Araport:AT2G13640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F5.18; T10F5_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (5686136..5687290, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cation/hydrogen exchanger 15 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene golgi nucleotide sugar transporter 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteins. Planchais S, et al. Plant Mol Biol, 2002 Sep. PMID 12139003
    2. Localization of the tomato bushy stunt virus replication protein p33 reveals a peroxisome-to-endoplasmic reticulum sorting pathway. McCartney AW, et al. Plant Cell, 2005 Dec. PMID 16284309, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126943.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription regulator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Transcription factor IIS family protein
    NP_178987.1
    • Transcription factor IIS family protein; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription factor IIS family protein (TAIR:AT5G27310.1); Has 1456 Blast hits to 1088 proteins in 195 species: Archae - 3; Bacteria - 172; Metazoa - 379; Fungi - 62; Plants - 135; Viruses - 4; Other Eukaryotes - 701 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      5686136..5687290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126943.1 → NP_178987.1  Transcription factor IIS family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178987.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q84V05, Q9SIT3
      Conserved Domains (1) summary
      smart00509
      Location:23 → 97
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
    Nucleotide Protein
    Heading Accession and Version

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