U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zinc ion binding / DNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836490, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    zinc ion binding / DNA binding protein
    Primary source
    TAIR:AT5G63700
    Locus tag
    AT5G63700
    See related
    Araport:AT5G63700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBK5.18; MBK5_18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (25493707..25497764, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pyruvate kinase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001345604.1
    NM_125765.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc ion binding / DNA binding protein
    NP_201175.2
    • zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25493707..25497764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125765.3 → NP_201175.2  zinc ion binding / DNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201175.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8L2, F4KAT5, Q9FFP4
      Conserved Domains (3) summary
      smart00719
      Location:401 → 500
      Plus3; Short conserved domain in transcriptional regulators
      cd15568
      Location:24 → 69
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      cd10567
      Location:261 → 337
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins

    2. NM_001345604.1 → NP_001332307.1  zinc ion binding / DNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UA88, A0A1P8BGI4
      Conserved Domains (3) summary
      smart00719
      Location:401 → 500
      Plus3; Short conserved domain in transcriptional regulators
      cd15568
      Location:24 → 69
      PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      cd10567
      Location:261 → 337
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.