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    LNP1 leukemia NUP98 fusion partner 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 507217, updated on 27-Dec-2024

    Summary

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    Gene symbol
    LNP1
    Gene description
    leukemia NUP98 fusion partner 1
    See related
    BGD:BT24570; Ensembl:ENSBTAG00000034442
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LNP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (44687462..44730499)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 23 Neighboring gene nitrilase family member 2 Neighboring gene translocase of outer mitochondrial membrane 70 Neighboring gene transmembrane protein 45A-like Neighboring gene endogenous retrovirus group PABLB member 1 Env polyprotein-like Neighboring gene endogenous retrovirus group PABLB member 1 Env polyprotein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leukemia NUP98 fusion partner 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205535.2 → NP_001192464.1  leukemia NUP98 fusion partner 1

      See identical proteins and their annotated locations for NP_001192464.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000001
      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3
      Related
      ENSBTAP00000069436.1, ENSBTAT00000085137.1
      Conserved Domains (1) summary
      pfam15419
      Location:12 → 176
      LNP1; Leukemia NUP98 fusion partner 1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44687462..44730499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059893324.1 → XP_059749307.1  leukemia NUP98 fusion partner 1 isoform X3

    2. XM_059893090.1 → XP_059749073.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    3. XM_059893245.1 → XP_059749228.1  leukemia NUP98 fusion partner 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3

    4. XM_059893145.1 → XP_059749128.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    5. XM_059893302.1 → XP_059749285.1  leukemia NUP98 fusion partner 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3
      Related
      ENSBTAP00000101940.1, ENSBTAT00000090849.1

    6. XM_059893115.1 → XP_059749098.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    7. XM_059893059.1 → XP_059749042.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98
      Related
      ENSBTAP00000098577.1, ENSBTAT00000135908.1

    8. XM_005201210.5 → XP_005201267.1  leukemia NUP98 fusion partner 1 isoform X2

      See identical proteins and their annotated locations for XP_005201267.1

      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3
      Conserved Domains (1) summary
      pfam15419
      Location:12 → 176
      LNP1; Leukemia NUP98 fusion partner 1

    9. XM_059893071.1 → XP_059749054.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    10. XM_005201211.5 → XP_005201268.1  leukemia NUP98 fusion partner 1 isoform X2

      See identical proteins and their annotated locations for XP_005201268.1

      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3
      Related
      ENSBTAP00000076699.1, ENSBTAT00000123733.1
      Conserved Domains (1) summary
      pfam15419
      Location:12 → 176
      LNP1; Leukemia NUP98 fusion partner 1

    11. XM_059893162.1 → XP_059749145.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    12. XM_059893092.1 → XP_059749075.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    13. XM_059893278.1 → XP_059749261.1  leukemia NUP98 fusion partner 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MJS4, A0AAA9RWC3

    14. XM_059893128.1 → XP_059749111.1  leukemia NUP98 fusion partner 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWC3, A0AAA9TQ98

    15. XM_059874261.1 → XP_059730244.1  leukemia NUP98 fusion partner 1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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