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    PapD-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816915, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PapD-like superfamily protein
    Primary source
    TAIR:AT2G23830
    Locus tag
    AT2G23830
    See related
    Araport:AT2G23830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29E15.3; T29E15_3
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (10143468..10144714)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tetraspanin8 Neighboring gene Metal-dependent phosphohydrolase Neighboring gene uncharacterized protein Neighboring gene HNH endonuclease

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A VAMP-associated protein, PVA31 is involved in leaf senescence in Arabidopsis. Ichikawa M, et al. Plant Signal Behav, 2015. PMID 25897470, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PapD-like superfamily protein
    NP_179963.1
    • PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 878 Blast hits to 874 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 130; Plants - 374; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10143468..10144714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127946.2 → NP_179963.1  PapD-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179963.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82213
      UniProtKB/TrEMBL
      A0A178VNP8, A0A5S9X0T5, A0A7G2EAI9
      Conserved Domains (1) summary
      pfam00635
      Location:6 → 113
      Motile_Sperm; MSP (Major sperm protein) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82213.1

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