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    SNRPD2 small nuclear ribonucleoprotein D2 polypeptide [ Bos taurus (domestic cattle) ]

    Gene ID: 514932, updated on 1-Jan-2025

    Summary

    Official Symbol
    SNRPD2provided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein D2 polypeptideprovided by VGNC
    Primary source
    VGNC:VGNC:35079
    See related
    BGD:BT19829; Ensembl:ENSBTAG00000012177
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See SNRPD2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (53253428..53256287, complement)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene EMAP like 2 Neighboring gene uncharacterized LOC132342712 Neighboring gene microRNA mir-330 Neighboring gene gastric inhibitory polypeptide receptor Neighboring gene glutaminyl-peptide cyclotransferase like Neighboring gene F-box protein 46 Neighboring gene meiosis initiator Neighboring gene SIX homeobox 5

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Pathways from PubChem

    General gene information

    Clone Names

    • MGC128077

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of pICln-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    small nuclear ribonucleoprotein Sm D2
    Names
    sm-D2
    small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
    snRNP core protein D2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034476.2NP_001029648.1  small nuclear ribonucleoprotein Sm D2

      See identical proteins and their annotated locations for NP_001029648.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102877
      UniProtKB/Swiss-Prot
      Q3SZF8
      Related
      ENSBTAP00000016153.3, ENSBTAT00000016153.4
      Conserved Domains (1) summary
      cd01720
      Location:24113
      Sm_D2; Sm protein D2

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      53253428..53256287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876687.1XP_059732670.1  small nuclear ribonucleoprotein Sm D2 isoform X2

    2. XM_059876688.1XP_059732671.1  small nuclear ribonucleoprotein Sm D2 isoform X3

    3. XM_059876686.1XP_059732669.1  small nuclear ribonucleoprotein Sm D2 isoform X1