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    USB1 U6 snRNA biogenesis phosphodiesterase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510934, updated on 30-Jan-2025

    Summary

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    Official Symbol
    USB1provided by VGNC
    Official Full Name
    U6 snRNA biogenesis phosphodiesterase 1provided by VGNC
    Primary source
    VGNC:VGNC:36703
    See related
    BGD:BT19757; EnsemblRapid:ENSBTAG00070020772
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C16orf57; C18H16orf57
    Orthologs
    human mouse all
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    Genomic context

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    See USB1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (25907660..25923158)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene testis, prostate and placenta expressed Neighboring gene zinc finger protein 319 Neighboring gene matrix metallopeptidase 15 Neighboring gene cilia and flagella associated protein 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152256

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in U6 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA phosphodiesterase 1
    Names
    3'-5' RNA exonuclease USB1
    U6 snRNA biogenesis 1
    U6 snRNA phosphodiesterase
    UPF0406 protein C16orf57 homolog
    putative U6 snRNA phosphodiesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075477.2 → NP_001068945.1  U6 snRNA phosphodiesterase 1

      See identical proteins and their annotated locations for NP_001068945.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122807
      UniProtKB/Swiss-Prot
      Q0II50
      UniProtKB/TrEMBL
      A0AAA9S6I2
      Related
      ENSBTAP00070028129.1, ENSBTAT00070046964.1
      Conserved Domains (1) summary
      pfam09749
      Location:43 → 263
      HVSL; Uncharacterized conserved protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25907660..25923158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218530.5 → XP_005218587.1  U6 snRNA phosphodiesterase 1 isoform X1

      See identical proteins and their annotated locations for XP_005218587.1

      Conserved Domains (1) summary
      pfam09749
      Location:1 → 212
      HVSL; Uncharacterized conserved protein

    2. XM_010814465.4 → XP_010812767.1  U6 snRNA phosphodiesterase 1 isoform X1

      See identical proteins and their annotated locations for XP_010812767.1

      Conserved Domains (1) summary
      pfam09749
      Location:1 → 212
      HVSL; Uncharacterized conserved protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0II50.1 GenPept UniProtKB/Swiss-Prot:Q0II50

    Gene LinkOut

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