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    ENTH/VHS/GAT family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836484, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ENTH/VHS/GAT family protein
    Primary source
    TAIR:AT5G63640
    Locus tag
    AT5G63640
    See related
    Araport:AT5G63640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBK5.12; MBK5_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (25477541..25481715)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene SNF1-related protein kinase 2.5 Neighboring gene Scorpion toxin-like knottin superfamily protein Neighboring gene SPT4 homolog 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis TOL proteins act as gatekeepers for vacuolar sorting of PIN2 plasma membrane protein. Korbei B, et al. Curr Biol, 2013 Dec 16. PMID 24316203
    2. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Miscellaneous features

    • Loc: 25477841-25477919 AT5G63640.uORF1
    • Loc: 25478599-25478603 AT5G63640.uORF2
    NM_001345600.1
    NM_125759.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    ENTH/VHS/GAT family protein
    NP_201169.1
    • ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25477541..25481715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125759.6 → NP_201169.1  ENTH/VHS/GAT family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201169.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFQ0
      UniProtKB/TrEMBL
      A0A178USH8, A0A5S9YGN0
      Conserved Domains (2) summary
      cd03561
      Location:2 → 130
      VHS; VHS (Vps27/Hrs/STAM) domain family
      cd14231
      Location:186 → 264
      GAT_GGA-like_plant; canonical GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants

    2. NM_001345600.1 → NP_001331835.1  ENTH/VHS/GAT family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFQ0
      UniProtKB/TrEMBL
      A0A178USH8, A0A5S9YGN0
      Conserved Domains (2) summary
      cd03561
      Location:2 → 130
      VHS; VHS (Vps27/Hrs/STAM) domain family
      cd14231
      Location:186 → 264
      GAT_GGA-like_plant; canonical GAT domain found in uncharacterized Golgi-localized gamma ear-containing Arf-binding protein (GGA)-like proteins mainly found in plants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFQ0.1

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