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    Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833627, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0016)
    Primary source
    TAIR:AT5G36290
    Locus tag
    AT5G36290
    See related
    Araport:AT5G36290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30G6.16; T30G6_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (14302662..14305182)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene acyl carrier protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The trans-Golgi-localized protein BICAT3 regulates manganese allocation and matrix polysaccharide biosynthesis. He J, et al. Plant Physiol, 2022 Nov 28. PMID 35993897, Free PMC Article
    2. A Golgi-localized manganese transporter functions in pollen tube tip growth to control male fertility in Arabidopsis. Zhang B, et al. Plant Commun, 2021 May 10. PMID 34027392, Free PMC Article
    3. Homologous Proteins of the Manganese Transporter PAM71 Are Localized in the Golgi Apparatus and Endoplasmic Reticulum. Hoecker N, et al. Plants (Basel), 2020 Feb 13. PMID 32069796, Free PMC Article
    4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A Golgi-localized manganese transporter functions in pollen tube tip growth to control male fertility in Arabidopsis.
      Title: A Golgi-localized manganese transporter functions in pollen tube tip growth to control male fertility in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_123020.5
    NM_180767.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables P-type calcium transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in manganese ion transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in Golgi trans cisterna membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0016)
    NP_568535.1
    • Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851098.1
    • Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 1755 Blast hits to 1667 proteins in 691 species: Archae - 14; Bacteria - 1095; Metazoa - 159; Fungi - 139; Plants - 208; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14302662..14305182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123020.5 → NP_568535.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568535.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DF76, Q93Y38, Q9FG57
      UniProtKB/TrEMBL
      A0A178UMW1, A0A384KCX0, A0A5S9Y8V9, I1VCB3
      Conserved Domains (1) summary
      COG2119
      Location:84 → 289
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]

    2. NM_180767.2 → NP_851098.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851098.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DF76, Q93Y38, Q9FG57
      UniProtKB/TrEMBL
      A0A178UMW1, A0A384KCX0, A0A5S9Y8V9, I1VCB3
      Conserved Domains (1) summary
      COG2119
      Location:84 → 289
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Y38.1

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