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    fanconi anemia group I-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834970, updated on 18-Sep-2024

    Summary

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    Official Full Name
    fanconi anemia group I-like protein
    Primary source
    TAIR:AT5G49110
    Locus tag
    AT5G49110
    See related
    Araport:AT5G49110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K20J1.8; K20J1_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (19900150..19906171)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene vitellogenin-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DUF581 family protein, putative (DUF581) Neighboring gene ncRNA Neighboring gene MATE efflux family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125928.1
    NM_124288.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    fanconi anemia group I-like protein
    NP_001119400.1
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_199722.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19900150..19906171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344814.1 → NP_001331416.1  fanconi anemia group I-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8P8, A0A1P8BDX4

    2. NM_001344815.1 → NP_001331415.1  fanconi anemia group I-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDW8, A0A7G2FFH3

    3. NM_124288.3 → NP_199722.2  fanconi anemia group I-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199722.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H5R7, Q9FH23
      Conserved Domains (1) summary
      cd11720
      Location:67 → 1362
      FANCI; Fanconi anemia I protein

    4. NM_001125928.1 → NP_001119400.1  fanconi anemia group I-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119400.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K4R1, Q9FH23
      Conserved Domains (1) summary
      cd11720
      Location:67 → 1363
      FANCI; Fanconi anemia I protein
    Nucleotide Protein
    Heading Accession and Version

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