U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EXPA21 expansin A21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833922, updated on 18-Sep-2024

    Summary

    Official Symbol
    EXPA21
    Official Full Name
    expansin A21
    Primary source
    TAIR:AT5G39260
    Locus tag
    AT5G39260
    See related
    Araport:AT5G39260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXP21; ATEXPA21; ATHEXP ALPHA 1.20; EXP21; EXPANSIN 21; expansin A21; K3K3.110; K3K3_110
    Summary
    expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See EXPA21 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (15726243..15727458, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription factor UPBEAT-like protein Neighboring gene pseudo Neighboring gene F-box family protein Neighboring gene expansin A22 Neighboring gene expansin A23

    General gene information

    NM_123288.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    expansin A21
    NP_198742.2
    • expansin A21 (EXPA21); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A25 (TAIR:AT5G39300.1); Has 2253 Blast hits to 2250 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 37; Plants - 2169; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15726243..15727458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123288.3NP_198742.2  expansin A21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198742.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WR9, Q9FL81
      UniProtKB/TrEMBL
      A0A5S9Y984, A0A654G693
      Conserved Domains (1) summary
      PLN00050
      Location:40259
      PLN00050; expansin A; Provisional