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    ANK1 ankyrin-like1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831855, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ANK1
    Official Full Name
    ankyrin-like1
    Primary source
    TAIR:AT5G02620
    Locus tag
    AT5G02620
    See related
    Araport:AT5G02620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ankyrin-like1; ATANK1; T22P11.210; T22P11_210
    Summary
    Encodes a member of the ankyrin repeat protein. Localized in the endoplasmic reticulum.
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    Genomic context

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    See ANK1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (589199..591752)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal L29 family protein Neighboring gene tRNA-Arg Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distribution of an ankyrin-repeat protein on the endoplasmic reticulum in Arabidopsis. Wei L, et al. J Integr Plant Biol, 2009 Feb. PMID 19200152
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120340.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    ankyrin-like1
    NP_195882.2
    • ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      589199..591752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342662.1 → NP_001331983.1  ankyrin-like1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWU3, Q6AWW5, Q9LZ40
      UniProtKB/TrEMBL
      A0A7G2F4K3

    2. NM_001342661.1 → NP_001331982.1  ankyrin-like1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URL6, A0A1P8BFK5

    3. NM_001342663.1 → NP_001331980.1  ankyrin-like1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWU3, Q6AWW5, Q9LZ40
      UniProtKB/TrEMBL
      A0A7G2F4K3

    4. NM_001342664.1 → NP_001331981.1  ankyrin-like1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URL6, A0A1P8BFK5

    5. NM_120340.4 → NP_195882.2  ankyrin-like1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195882.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWU3, Q6AWW5, Q9LZ40
      UniProtKB/TrEMBL
      A0A7G2F4K3
      Conserved Domains (4) summary
      cd00204
      Location:122 → 247
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:95 → 183
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:344 → 460
      PGG; Domain of unknown function
      sd00045
      Location:158 → 190
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AWW5.1

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