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    Galactosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835415, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactosyltransferase family protein
    Primary source
    TAIR:AT5G53340
    Locus tag
    AT5G53340
    See related
    Araport:AT5G53340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19E1.14; K19E1_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (21640809..21643666, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme 10 Neighboring gene myosin heavy chain-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene ncRNA Neighboring gene CLP protease regulatory subunit X Neighboring gene TRAF-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis. Ogawa-Ohnishi M, et al. Plant J, 2015 Mar. PMID 25600942
    2. Hydroxyproline-O-Galactosyltransferases Synthesizing Type II Arabinogalactans Are Essential for Male Gametophytic Development in Arabidopsis. Kaur D, et al. Front Plant Sci, 2022. PMID 35774810, Free PMC Article
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036990.2
    NM_124713.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables hydroxyproline O-galactosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arabinogalactan protein metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen wall assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein O-linked glycosylation via hydroxyproline IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in Golgi medial cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Galactosyltransferase family protein
    NP_001032067.1
    • Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G32120.1); Has 782 Blast hits to 773 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 0; Plants - 529; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    NP_568791.1
    • Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G32120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21640809..21643666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124713.4 → NP_568791.1  Galactosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568791.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V2Z0, Q94F27, Q9FK08
      UniProtKB/TrEMBL
      A0A654GAS3, W8PUB4
      Conserved Domains (2) summary
      PLN03193
      Location:76 → 335
      PLN03193; beta-1,3-galactosyltransferase; Provisional
      pfam13334
      Location:17 → 91
      DUF4094; Domain of unknown function (DUF4094)

    2. NM_001036990.2 → NP_001032067.1  Galactosyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032067.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GAS3
      Conserved Domains (2) summary
      pfam13334
      Location:17 → 91
      DUF4094; Domain of unknown function (DUF4094)
      cl21608
      Location:124 → 320
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94F27.1

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