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    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832329, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT5G22660
    Locus tag
    AT5G22660
    See related
    Araport:AT5G22660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDJ22.8; MDJ22_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (7536236..7538052, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene arogenate dehydratase 5 Neighboring gene MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein Neighboring gene histone deacetylase 2B Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene F-box protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085145.2
    NM_122172.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    NP_001078614.1
    • FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2291 Blast hits to 2253 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2290; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_197658.2
    • FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2205 Blast hits to 2174 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7536236..7538052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085145.2 → NP_001078614.1  FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078614.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MSB2, Q9FNJ5
      UniProtKB/TrEMBL
      A0A178UMF4
      Conserved Domains (4) summary
      smart00579
      Location:374 → 445
      FBD; domain in FBox and BRCT domain containing plant proteins
      PHA03393
      Location:156 → 272
      odv-e66; occlusion-derived virus envelope protein E66; Provisional
      sd00032
      Location:139 → 159
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:13 → 51
      F-box; F-box domain

    2. NM_122172.3 → NP_197658.2  FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197658.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNJ5
      Conserved Domains (4) summary
      PHA03393
      Location:156 → 272
      odv-e66; occlusion-derived virus envelope protein E66; Provisional
      sd00032
      Location:139 → 159
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:13 → 51
      F-box; F-box domain
      pfam07723
      Location:159 → 184
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNJ5.1

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