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    DOF4.7 DNA binding with one finger 4.7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829956, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DOF4.7
    Official Full Name
    DNA binding with one finger 4.7
    Primary source
    TAIR:AT4G38000
    Locus tag
    AT4G38000
    See related
    Araport:AT4G38000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DNA binding with one finger 4.7; F20D10.120; F20D10_120
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    Genomic context

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    See DOF4.7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (17858351..17859325)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cinnamyl alcohol dehydrogenase 7 Neighboring gene cinnamyl alcohol dehydrogenase 8 Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene tRNA/rRNA methyltransferase (SpoU) family protein Neighboring gene Rhamnogalacturonate lyase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of AtDOF4.7, an Arabidopsis DOF family transcription factor, induces floral organ abscission deficiency in Arabidopsis. Wei PC, et al. Plant Physiol, 2010 Jul. PMID 20466844, Free PMC Article
    2. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtDOF4.7 participates in the control of abscission as part of the transcription complex that directly regulates the expression of cell wall hydrolysis enzymes. [DOF4.7]
      Title: Overexpression of AtDOF4.7, an Arabidopsis DOF family transcription factor, induces floral organ abscission deficiency in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_119961.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ abscission IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding with one finger 4.7
    NP_195513.2
    • DNA binding with one finger 4.7 (DOF4.7); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1084 Blast hits to 1079 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1079; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17858351..17859325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119961.4 → NP_195513.2  DNA binding with one finger 4.7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195513.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84K52, Q9SZK0
      UniProtKB/TrEMBL
      A0A178V5K8, A0A384KID3, Q0WQS4
      Conserved Domains (1) summary
      pfam02701
      Location:40 → 96
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84K52.1

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