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    PSB28 photosystem II reaction center PSB28 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828984, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSB28
    Official Full Name
    photosystem II reaction center PSB28 protein
    Primary source
    TAIR:AT4G28660
    Locus tag
    AT4G28660
    See related
    Araport:AT4G28660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    photosystem II reaction center PSB28 protein; T5F17.110; T5F17_110
    Summary
    Similar to PsbW subunit of photosystem II.
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    Genomic context

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    See PSB28 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (14149849..14151163)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene indole-3-acetic acid inducible 11 Neighboring gene Leucine-rich repeat transmembrane protein kinase family protein Neighboring gene ncRNA Neighboring gene cysteine-rich RECEPTOR-like kinase, putative (DUF26) Neighboring gene L-tyrosine decarboxylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    2. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    4. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    5. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203931.1
    NM_119008.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    photosystem II reaction center PSB28 protein
    NP_001190860.1
    • photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, photosystem II reaction center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610).
    NP_567814.1
    • photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem II reaction center, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14149849..14151163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119008.4 → NP_567814.1  photosystem II reaction center PSB28 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567814.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W0Y8, Q9M0G6
      UniProtKB/TrEMBL
      A0A5S9XXM7, A0A654FTR0
      Conserved Domains (1) summary
      PLN00039
      Location:72 → 182
      PLN00039; photosystem II reaction center Psb28 protein; Provisional

    2. NM_001203931.1 → NP_001190860.1  photosystem II reaction center PSB28 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190860.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JM05
      Conserved Domains (1) summary
      PLN00039
      Location:87 → 197
      PLN00039; photosystem II reaction center Psb28 protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W0Y8.1

    Gene LinkOut

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