Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Heavy metal transport/detoxification superfamily protein
Primary source: TAIR:AT4G27590
Locus tag: AT4G27590
See related: Araport:AT4G27590
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T29A15.80; T29A15_80
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (13771089..13772594)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001160799.1

Supported by ESTs:

NM_118895.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Heavy metal transport/detoxification superfamily protein

NP_001154271.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 739 Blast hits to 739 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 735; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NP_567779.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G56891.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

13771089..13772594

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_118895.2 → NP_567779.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567779.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V1I8, F4JJP0, Q8LG12

Conserved Domains (1) summary

cd00371
Location:19 → 78

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001160799.1 → NP_001154271.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154271.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FTB3, F4JJN9

Conserved Domains (1) summary

cd00371
Location:19 → 78

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...