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    dehydratase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821977, updated on 18-Sep-2024

    Summary

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    Official Full Name
    dehydratase family
    Primary source
    TAIR:AT3G23940
    Locus tag
    AT3G23940
    See related
    Araport:AT3G23940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (8648669..8652605)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene beta-amylase 1 Neighboring gene troponin T, skeletal protein Neighboring gene F-box family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dihydroxyacid dehydratase is important for gametophyte development and disruption causes increased susceptibility to salinity stress in Arabidopsis. Zhang C, et al. J Exp Bot, 2015 Feb. PMID 25399005, Free PMC Article
    2. Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Mutwil M, et al. Plant Physiol, 2010 Jan. PMID 19889879, Free PMC Article
    3. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203030.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    enables dihydroxy-acid dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydro-lyase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-valine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within branched-chain amino acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in isoleucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    dehydratase family
    NP_001189959.1
    • dehydratase family; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581).
    NP_189036.1
    • dehydratase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: pollen development; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581); Has 13943 Blast hits to 13934 proteins in 2322 species: Archae - 210; Bacteria - 7441; Metazoa - 5; Fungi - 304; Plants - 157; Viruses - 0; Other Eukaryotes - 5826 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8648669..8652605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113299.5 → NP_189036.1  dehydratase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189036.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J5B4, Q94BS6, Q9LIR4
      UniProtKB/TrEMBL
      A0A178VEH1, A0A5S9XF70, A0A7G2EKY6
      Conserved Domains (1) summary
      PRK00911
      Location:55 → 607
      PRK00911; dihydroxy-acid dehydratase; Provisional

    2. NM_001203030.1 → NP_001189959.1  dehydratase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189959.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EKY6
      Conserved Domains (1) summary
      PRK00911
      Location:55 → 605
      PRK00911; dihydroxy-acid dehydratase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LIR4.1

    Gene LinkOut

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