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    zein-binding protein (Protein of unknown function, DUF593) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824639, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zein-binding protein (Protein of unknown function, DUF593)
    Primary source
    TAIR:AT3G54740
    Locus tag
    AT3G54740
    See related
    Araport:AT3G54740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20262175..20264686)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Peptidase M28 family protein Neighboring gene transcription repressor Neighboring gene downstream neighbor of Son Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084816.2
    NM_001339688.1
    NM_001339689.1
    NM_001339692.1
    NM_001339693.1
    NM_115331.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zein-binding protein (Protein of unknown function, DUF593)
    NP_001319750.1
    • Protein of unknown function, DUF593; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G06560.1); Has 360 Blast hits to 346 proteins in 26 species: Archae - 3; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    NP_001319751.1
    • Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G06560.1); Has 386 Blast hits to 371 proteins in 36 species: Archae - 3; Bacteria - 4; Metazoa - 10; Fungi - 3; Plants - 346; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20262175..20264686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339690.1 → NP_001325670.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAX5, A0A5S9XKU7, Q9M1S6
      Conserved Domains (1) summary
      pfam04576
      Location:72 → 163
      Zein-binding

    2. NM_001339691.1 → NP_001325672.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8L5, F4JE14
      Conserved Domains (1) summary
      pfam04576
      Location:24 → 115
      Zein-binding

    3. NM_001339689.1 → NP_001319751.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAX5, A0A5S9XKU7, Q9M1S6
      Conserved Domains (1) summary
      pfam04576
      Location:72 → 163
      Zein-binding

    4. NM_001339688.1 → NP_001319750.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8L5, F4JE14
      Conserved Domains (1) summary
      pfam04576
      Location:24 → 115
      Zein-binding

    5. NM_001339692.1 → NP_001325671.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAX5, A0A5S9XKU7, Q9M1S6
      Conserved Domains (1) summary
      pfam04576
      Location:72 → 163
      Zein-binding

    6. NM_001339693.1 → NP_001325673.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8L5, F4JE14
      Conserved Domains (1) summary
      pfam04576
      Location:24 → 115
      Zein-binding

    7. NM_001084816.2 → NP_001078285.1  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAX5, A0A5S9XKU7, Q9M1S6
      Conserved Domains (1) summary
      pfam04576
      Location:72 → 163
      Zein-binding

    8. NM_115331.4 → NP_191034.2  zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191034.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V8L5, F4JE14
      Conserved Domains (1) summary
      pfam04576
      Location:24 → 115
      Zein-binding
    Nucleotide Protein
    Heading Accession and Version

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