Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Protein kinase superfamily protein
Primary source: TAIR:AT3G25840
Locus tag: AT3G25840
See related: Araport:AT3G25840
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 16

Sequence:: Chromosome: 3; NC_003074.8 (9451861..9457554, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

PRP4KA may influence alternative splicing patterns by phosphorylating a subset of splicing regulators. [PRP4KA]
Title: PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001084739.2

Supported by ESTs:

NM_113486.7

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within alternative mRNA splicing, via spliceosome	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in mRNA cis splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Protein kinase superfamily protein

NP_001078208.1

Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G13350.1); Has 128768 Blast hits to 102988 proteins in 2920 species: Archae - 165; Bacteria - 11507; Metazoa - 55869; Fungi - 16191; Plants - 15087; Viruses - 722; Other Eukaryotes - 29227 (source: NCBI BLink).

NP_189213.2

Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G13350.1); Has 159605 Blast hits to 120248 proteins in 3358 species: Archae - 256; Bacteria - 15698; Metazoa - 69851; Fungi - 20258; Plants - 17457; Viruses - 788; Other Eukaryotes - 35297 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

9451861..9457554 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_113486.7 → NP_189213.2 Protein kinase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_189213.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FAQ9, Q8RWN3

Conserved Domains (4) summary

smart00220
Location:617 → 932

S_TKc; Serine/Threonine protein kinases, catalytic domain

cd14135
Location:616 → 932

STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4

pfam08648
Location:315 → 439

DUF1777; Protein of unknown function (DUF1777)

pfam12871
Location:186 → 266

PRP38_assoc; Pre-mRNA-splicing factor 38-associated hydrophilic C-term
NM_001084739.2 → NP_001078208.1 Protein kinase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078208.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VD58, A8MR79

Conserved Domains (3) summary

smart00220
Location:355 → 670

S_TKc; Serine/Threonine protein kinases, catalytic domain

cd14135
Location:354 → 670

STKc_PRP4; Catalytic domain of the Serine/Threonine Kinase, Pre-mRNA-Processing factor 4

pfam08648
Location:53 → 177

DUF1777; Protein of unknown function (DUF1777)