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    SETH3 Sugar isomerase (SIS) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824634, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SETH3
    Official Full Name
    Sugar isomerase (SIS) family protein
    Primary source
    TAIR:AT3G54690
    Locus tag
    AT3G54690
    See related
    Araport:AT3G54690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See SETH3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (20246504..20248152)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Structural maintenance of chromosomes (SMC) family protein Neighboring gene proteophosphoglycan-like protein Neighboring gene phosphate transporter 1;7 Neighboring gene CDT1-like protein B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_115326.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables arabinose-5-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate derivative metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sugar isomerase (SIS) family protein
    NP_191029.1
    • Sugar isomerase (SIS) family protein; FUNCTIONS IN: isomerase activity, sugar binding; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: KpsF/GutQ (InterPro:IPR004800), Sugar isomerase (SIS) (InterPro:IPR001347), Cystathionine beta-synthase, core (InterPro:IPR000644); Has 8722 Blast hits to 8719 proteins in 1857 species: Archae - 184; Bacteria - 5776; Metazoa - 15; Fungi - 131; Plants - 43; Viruses - 2; Other Eukaryotes - 2571 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20246504..20248152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115326.5 → NP_191029.1  Sugar isomerase (SIS) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191029.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1T1
      UniProtKB/TrEMBL
      A0A178VFX5, A0A5S9XMI8
      Conserved Domains (1) summary
      PRK11543
      Location:62 → 350
      gutQ; arabinose-5-phosphate isomerase GutQ
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1T1.1

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