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    D-galactoside/L-rhamnose binding SUEL lectin protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824471, updated on 18-Sep-2024

    Summary

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    Official Full Name
    D-galactoside/L-rhamnose binding SUEL lectin protein
    Primary source
    TAIR:AT3G53050
    Locus tag
    AT3G53050
    See related
    Araport:AT3G53050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19669084..19669774)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ser/arg-rich protein kinase 4 Neighboring gene late embryogenesis abundant protein, putative / LEA protein Neighboring gene SKP1-like 6 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115165.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    D-galactoside/L-rhamnose binding SUEL lectin protein
    NP_190873.1
    • D-galactoside/L-rhamnose binding SUEL lectin protein; FUNCTIONS IN: sugar binding, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922); BEST Arabidopsis thaliana protein match is: D-galactoside/L-rhamnose binding SUEL lectin protein (TAIR:AT3G53080.1); Has 320 Blast hits to 320 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19669084..19669774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115165.2 → NP_190873.1  D-galactoside/L-rhamnose binding SUEL lectin protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190873.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XL30, A0A654FFC0, Q9LF87
      Conserved Domains (1) summary
      pfam02140
      Location:77 → 141
      Gal_Lectin; Galactose binding lectin domain
    Nucleotide Protein
    Heading Accession and Version

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