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    mismatched DNA binding / ATP binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820840, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mismatched DNA binding / ATP binding protein
    Primary source
    TAIR:AT3G15960
    Locus tag
    AT3G15960
    See related
    Araport:AT3G15960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (5403970..5406461, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA Neighboring gene DNA topoisomerase-like protein Neighboring gene NUP50 (Nucleoporin 50 kDa) protein Neighboring gene Coatomer, beta' subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mismatched DNA binding / ATP binding protein
    NP_188217.4
    • mismatched DNA binding;ATP binding; FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, connector (InterPro:IPR007860); BEST Arabidopsis thaliana protein match is: TSK-associating protein 1 (TAIR:AT1G52410.2); Has 2921 Blast hits to 2140 proteins in 360 species: Archae - 16; Bacteria - 619; Metazoa - 982; Fungi - 382; Plants - 162; Viruses - 5; Other Eukaryotes - 755 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5403970..5406461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112466.5 → NP_188217.4  mismatched DNA binding / ATP binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188217.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1D9, Q9LSB3
      UniProtKB/TrEMBL
      A0A5S9XCR2, A0A654FH91
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J1D9.1

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