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    glycoside hydrolase family 2 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824610, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glycoside hydrolase family 2 protein
    Primary source
    TAIR:AT3G54440
    Locus tag
    AT3G54440
    See related
    Araport:AT3G54440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    17
    Sequence:
    Chromosome: 3; NC_003074.8 (20148208..20157199, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene hypothetical protein (DUF1163) Neighboring gene homolog of carrot EP3-3 chitinase Neighboring gene SHI-related sequence 6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Control of lateral root initiation by DA3 in Arabidopsis. Peng Y, et al. Cell Rep, 2023 Jan 31. PMID 36640335
    2. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Control of lateral root initiation by DA3 in Arabidopsis.
      Title: Control of lateral root initiation by DA3 in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035781.1
    NM_001203158.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of beta-galactosidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast HDA PubMed 
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycoside hydrolase family 2 protein
    NP_001030858.1
    • glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Galactose-binding domain-like (InterPro:IPR008979); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190087.1
    • glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781).
    NP_680128.1
    • glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Galactose-binding domain-like (InterPro:IPR008979); Has 7598 Blast hits to 7490 proteins in 1389 species: Archae - 50; Bacteria - 5980; Metazoa - 182; Fungi - 208; Plants - 51; Viruses - 3; Other Eukaryotes - 1124 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20148208..20157199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148873.3 → NP_680128.1  glycoside hydrolase family 2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680128.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJY7, A0A384L9U1, A0A654FFQ8, Q8RWQ2
      Conserved Domains (1) summary
      PRK09525
      Location:17 → 1090
      lacZ; beta-galactosidase

    2. NM_001203158.1 → NP_001190087.1  glycoside hydrolase family 2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190087.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XL18, A0A654FFQ8, F4JCX1
      Conserved Domains (1) summary
      PRK09525
      Location:78 → 1103
      lacZ; beta-galactosidase

    3. NM_001035781.1 → NP_001030858.1  glycoside hydrolase family 2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030858.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FFQ8, F4JCX0
      Conserved Domains (6) summary
      PRK09525
      Location:17 → 1091
      lacZ; beta-D-galactosidase; Reviewed
      pfam00703
      Location:261 → 390
      Glyco_hydro_2; Glycosyl hydrolases family 2
      pfam02837
      Location:85 → 259
      Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
      pfam02929
      Location:814 → 1089
      Bgal_small_N; Beta galactosidase small chain
      pfam16353
      Location:685 → 776
      DUF4981; Domain of unknown function(DUF4981)
      cl23725
      Location:397 → 678
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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