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    RFC3 Translation elongation factor EF1B/ribosomal protein S6 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820974, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RFC3
    Official Full Name
    Translation elongation factor EF1B/ribosomal protein S6 family protein
    Primary source
    TAIR:AT3G17170
    Locus tag
    AT3G17170
    See related
    Araport:AT3G17170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    REGULATOR OF FATTY-ACID COMPOSITION 3
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    Genomic context

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    See RFC3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (5853059..5854906, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Cysteine-rich protein Neighboring gene uncharacterized protein Neighboring gene serine carboxypeptidase-like 33 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plastid translation is essential for lateral root stem cell patterning in Arabidopsis thaliana. Nakata MT, et al. Biol Open, 2018 Feb 5. PMID 29367414, Free PMC Article
    2. Mutations in a gene for plastid ribosomal protein S6-like protein reveal a novel developmental process required for the correct organization of lateral root meristem in Arabidopsis. Horiguchi G, et al. Plant J, 2003 Feb. PMID 12581310
    3. The bRPS6-Family Protein RFC3 Prevents Interference by the Splicing Factor CFM3b during Plastid rRNA Biogenesis in Arabidopsis thaliana. Nagashima Y, et al. Plants (Basel), 2020 Mar 4. PMID 32143506, Free PMC Article
    4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112593.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid localization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid rRNA transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plastid rRNA transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plastid transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in primary root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of root meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root meristem specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root meristem specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translation elongation factor EF1B/ribosomal protein S6 family protein
    NP_566568.1
    • REGULATOR OF FATTY-ACID COMPOSITION 3 (RFC3); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 13593 Blast hits to 10425 proteins in 2441 species: Archae - 19; Bacteria - 4805; Metazoa - 3511; Fungi - 908; Plants - 375; Viruses - 253; Other Eukaryotes - 3722 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5853059..5854906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112593.3 → NP_566568.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566568.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V657, Q8LE34, Q948R9, Q9LSN0
      UniProtKB/TrEMBL
      A0A384KEQ6
      Conserved Domains (1) summary
      PRK00453
      Location:120 → 217
      rpsF; 30S ribosomal protein S6; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q948R9.1

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