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    GH9A4 glycosyl hydrolase 9A4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823499, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9A4
    Official Full Name
    glycosyl hydrolase 9A4
    Primary source
    TAIR:AT3G43860
    Locus tag
    AT3G43860
    See related
    Araport:AT3G43860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9A4; glycosyl hydrolase 9A4
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    Genomic context

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    See GH9A4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (15706954..15709989)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development. Xie XJ, et al. Mol Biol (Mosk), 2011 May-Jun. PMID 21790012
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. these results suggested that endo-beta-1,4-D-glucanases At3g43860 and At4g39000 play specific roles in Arabidopsis sexual reproduction.
      Title: Expression patterns of two Arabidopsis endo-beta-1,4-glucanase genes (At3g43860, At4g39000) in reproductive development.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001339113.1
    NM_114254.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9A4
    NP_189972.2
    • glycosyl hydrolase 9A4 (GH9A4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1796 Blast hits to 1785 proteins in 262 species: Archae - 2; Bacteria - 633; Metazoa - 188; Fungi - 19; Plants - 915; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15706954..15709989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114254.3 → NP_189972.2  glycosyl hydrolase 9A4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189972.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYG3, Q9LZG2
      UniProtKB/TrEMBL
      A0A654FH76
      Conserved Domains (1) summary
      PLN02909
      Location:1 → 486
      PLN02909; Endoglucanase

    2. NM_001339113.1 → NP_001327805.1  glycosyl hydrolase 9A4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYG3, Q9LZG2
      UniProtKB/TrEMBL
      A0A654FH76
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYG3.1

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