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    uvrB/uvrC motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814868, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uvrB/uvrC motif-containing protein
    Primary source
    TAIR:AT2G03390
    Locus tag
    AT2G03390
    See related
    Araport:AT2G03390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4M8.18; T4M8_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (1030402..1032718, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene Mo25 family protein Neighboring gene Ankyrin repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery. Nishimura K, et al. Plant Cell, 2015 Oct. PMID 26419670, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A ClpS1-interacting protein in Arabidopsis thaliana, ClpF, can interact with the Clp substrate glutamyl-tRNA reductase. ClpF and ClpS1 mutually stimulate their association with ClpC.
      Title: Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001202575.1
    NM_001335179.1
    NM_001335180.1
    NM_001335182.1
    NM_001335183.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    part_of chloroplastic endopeptidase Clp complex IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uvrB/uvrC motif-containing protein
    NP_001189504.1
    • uvrB/uvrC motif-containing protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hemimethylated DNA-binding domain (InterPro:IPR011722), UvrB/UvrC protein (InterPro:IPR001943).
    NP_178438.2
    • uvrB/uvrC motif-containing protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hemimethylated DNA-binding domain (InterPro:IPR011722), UvrB/UvrC protein (InterPro:IPR001943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1030402..1032718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126390.4 → NP_178438.2  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178438.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67Y99, Q8L7K8, Q9ZQ75, Q9ZQ76
      UniProtKB/TrEMBL
      A0A178VSE1, A0A5S9WWT6
      Conserved Domains (2) summary
      TIGR02097
      Location:203 → 307
      yccV; hemimethylated DNA binding domain
      pfam02151
      Location:156 → 188
      UVR; UvrB/uvrC motif

    2. NM_001335181.1 → NP_001325261.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQI6, A0A1P8B2M3

    3. NM_001202575.1 → NP_001189504.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189504.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67Y99
      Conserved Domains (2) summary
      TIGR02097
      Location:93 → 197
      yccV; hemimethylated DNA binding domain
      pfam02151
      Location:46 → 78
      UVR; UvrB/uvrC motif

    4. NM_001335179.1 → NP_001325262.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQI6, A0A1P8B2M3

    5. NM_001335182.1 → NP_001325258.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNU2, A0A1P8B2M4

    6. NM_001335180.1 → NP_001325260.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67Y99, Q8L7K8, Q9ZQ75, Q9ZQ76
      UniProtKB/TrEMBL
      A0A178VSE1, A0A5S9WWT6
      Conserved Domains (2) summary
      TIGR02097
      Location:203 → 307
      yccV; hemimethylated DNA binding domain
      pfam02151
      Location:156 → 188
      UVR; UvrB/uvrC motif

    7. NM_001335183.1 → NP_001325259.1  uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNU2, A0A1P8B2M4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67Y99.1

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