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    GATB GLU-ADT subunit B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841273, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATB
    Official Full Name
    GLU-ADT subunit B
    Primary source
    TAIR:AT1G48520
    Locus tag
    AT1G48520
    See related
    Araport:AT1G48520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GLU-ADT subunit B
    Summary
    Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).
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    Genomic context

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    See GATB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (17940050..17942864)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene jasmonate-zim-domain protein 4 Neighboring gene Surfeit locus 1 cytochrome c oxidase biogenesis protein Neighboring gene proteasome inhibitor-like protein Neighboring gene Outer arm dynein light chain 1 protein Neighboring gene Vacuolar protein sorting-associated protein 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103748.3
    NM_202261.2
    NM_202262.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GLU-ADT subunit B
    NP_564530.1
    • GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).
    NP_973990.1
    • GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973991.1
    • GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17940050..17942864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103748.3 → NP_564530.1  GLU-ADT subunit B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564530.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HYH2, Q9FV81, Q9LP72
      UniProtKB/TrEMBL
      A0A178W7I9, A0A5S9WN17
      Conserved Domains (1) summary
      PLN02751
      Location:1 → 549
      PLN02751; glutamyl-tRNA(Gln) amidotransferase

    2. NM_202261.2 → NP_973990.1  GLU-ADT subunit B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973990.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FV81
      Conserved Domains (2) summary
      pfam02637
      Location:399 → 463
      GatB_Yqey; GatB domain
      pfam02934
      Location:72 → 361
      GatB_N; GatB/GatE catalytic domain

    3. NM_202262.1 → NP_973991.1  GLU-ADT subunit B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973991.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HYH1
      Conserved Domains (3) summary
      PLN02751
      Location:1 → 485
      PLN02751; glutamyl-tRNA(Gln) amidotransferase
      pfam02637
      Location:399 → 488
      GatB_Yqey; GatB domain
      pfam02934
      Location:72 → 361
      GatB_N; GatB/GatE catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FV81.1

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